other · Figshare · 2011

Pipeline dataflow

CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin, SE Lewis

Cited by 0Open access

Abstract

<b>Copyright information:</b>Taken from "An integrated computational pipeline and database to support whole-genome sequence annotation"Genome Biology 2002;3(12):research0081.1-81.11.Published online 23 Dec 2002PMCID:PMC151183.Copyright © 2002 Mungall et al., licensee BioMed Central Ltd Finished genomic sequence is deposited in Gadfly, and then fed to the pipeline database, which manages jobs, dispatching them to the compute farm via PBS. When a job finishes, the pipeline database stores the output. BOP filters this output and exports GAME XML to Gadfly. A cycle of annotation consists of curators loading GAME XML into Apollo, either directly from Gadfly or from a data directory. Modified annotations are then written to a directory and loaded into Gadfly.

Cite this paper

APA 7

Mungall, C., Misra, S., Berman, B., Carlson, J., Frise, E., Harris, N., Marshall, B., Shu, S., Kaminker, J., Prochnik, S., Smith, C., Smith, E., Tupy, J., Wiel, C., Rubin, G., & Lewis, S. (2011). Pipeline dataflow. Figshare. https://doi.org/10.6084/m9.figshare.1025.v1

MLA 9

Mungall, CJ, et al. “Pipeline dataflow.” Figshare, 2011, https://doi.org/10.6084/m9.figshare.1025.v1.

Chicago

Mungall, CJ, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, et al. 2011. “Pipeline dataflow.” Figshare. https://doi.org/10.6084/m9.figshare.1025.v1.

Harvard

Mungall, C. et al. (2011) ‘Pipeline dataflow’, Figshare. Available at: https://doi.org/10.6084/m9.figshare.1025.v1.

BibTeX

@misc{mungall2011pipeline,
  title = {{Pipeline dataflow}},
  author = {Mungall, CJ and Misra, S and Berman, BP and Carlson, J and Frise, E and Harris, N and Marshall, B and Shu, S and Kaminker, JS and Prochnik, SE and Smith, CD and Smith, E and Tupy, JL and Wiel, C and Rubin, GM and Lewis, SE},
  journal = {Figshare},
  year = {2011},
  doi = {10.6084/m9.figshare.1025.v1}
}

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