other · Figshare · 2015
Differential expression analysis.
Kristin Reiche (25614), Katharina Kasack (636069), Stephan Schreiber (636070), Torben Lüders (636071), Eldri U. Due (636072), Bjørn Naume (72631), Margit Riis (636073), Vessela N. Kristensen (227885), Friedemann Horn (479447), Anne-Lise Børresen-Dale (3413), Jörg Hackermüller (39435), Lars O. Baumbusch (276216)
Cited by 0Open access
Abstract
<p>The expression patterns of mRNA-probes and non-coding probes of 26 breast tumors and 5 normal breast tissues were investigated using the custom microarray. (<b>A.</b>) Fraction of unique genomic loci significantly differentially expressed () between normal and tumor samples located completely in exons of protein-coding genes (Gencode v12), in exons of known lncRNAs (lincRNAs, Gencode v12 lncRNAs, lncRNAs as annotated in lncRNAdb <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0106076#pone.0106076-Amaral1" target="_blank">[51]</a>, and lncRNAs contained in chromatin <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0106076#pone.0106076-Mondal1" target="_blank">[27]</a>), in exons of transcripts of uncertain coding potential (TUCPs <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0106076#pone.0106076-Cabili1" target="_blank">[23]</a>), in exons of short RNAs (UCSC sno/miRNA track), in genomic loci with conserved secondary structure motifs (Evofold <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0106076#pone.0106076-Pedersen1" target="_blank">[59]</a>, RNAz <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0106076#pone.0106076-Gruber1" target="_blank">[58]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0106076#pone.0106076-Washietl3" target="_blank">[97]</a> and SISSIz <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0106076#pone.0106076-Gesell1" target="_blank">[53]</a>), in antisense-direction to known exons (Gencode v12), or in novel genomic regions. (<b>B.</b>) Fraction of unique genomic loci significantly differentially expressed () between Basal-like and Luminal tumors and located in genomic annotations as described for panel A. Numbers beside bars denote absolute number of unique DE-loci.</p>
Cite this paper
(25614), K. R., (636069), K. K., (636070), S. S., (636071), T. L., (636072), E. U. D., (72631), B. N., (636073), M. R., (227885), V. N. K., (479447), F. H., (3413), A.-L. B.-D., (39435), J. H., & (276216), L. O. B. (2015). Differential expression analysis. Figshare. https://doi.org/10.1371/journal.pone.0106076.g001
(25614), Kristin Reiche, et al. “Differential expression analysis.” Figshare, 2015, https://doi.org/10.1371/journal.pone.0106076.g001.
(25614), Kristin Reiche, Katharina Kasack (636069), Stephan Schreiber (636070), Torben Lüders (636071), Eldri U. Due (636072), Bjørn Naume (72631), Margit Riis (636073), et al. 2015. “Differential expression analysis.” Figshare. https://doi.org/10.1371/journal.pone.0106076.g001.
(25614), K.R. et al. (2015) ‘Differential expression analysis’, Figshare. Available at: https://doi.org/10.1371/journal.pone.0106076.g001.
@misc{256142015differential,
title = {{Differential expression analysis.}},
author = {(25614), Kristin Reiche and (636069), Katharina Kasack and (636070), Stephan Schreiber and (636071), Torben Lüders and (636072), Eldri U. Due and (72631), Bjørn Naume and (636073), Margit Riis and (227885), Vessela N. Kristensen and (479447), Friedemann Horn and (3413), Anne-Lise Børresen-Dale and (39435), Jörg Hackermüller and (276216), Lars O. Baumbusch},
journal = {Figshare},
year = {2015},
doi = {10.1371/journal.pone.0106076.g001}
}Made from the index record. Check names, capitalisation and page numbers against the paper. Need another style? AI for Research has over 10,000.