other · Zenodo (CERN European Organization for Nuclear Research) · 2017

nathanweeks/htslib-openmp: openmp-cluster_computing

Pd3, Marshall, John, Bonfield, James, Li, Heng, Daviesrob, Weeks, Nathan T., Pollard, Martin, McCarthy, Shane, Turner, Isaac, Randall, Joshua C., Carneiro, Mauricio, Jmthibault79, Dkj, Tan, Adrian, Reinders, Kirkmcclure, Simpson, Jared, Liddle, Jennifer, Ryan, Devon, Ryan10X, Shirley, Matt, Squire, Kevin, Gururaj, Karthik, Spaltenstein, Joël, Piper, Jason, Droazen, Garcia, Cristina Yenyxe Gonzalez, Tarasov, Artem, Masella, Andre, Elghraoui, Afif

Cited by 0Open access

Abstract

This is a version of HTSlib (https://github.com/samtools/htslib) with OpenMP optimizations described in the manuscript: <code>Nathan T. Weeks and Glenn R. Luecke, "Optimization of SAMtools Sorting Using OpenMP Tasks". Cluster Computing. (submitted) </code>

Cite this paper

APA 7

Pd3, Marshall, J., Bonfield, J., Li, H., Daviesrob, Weeks, N. T., Pollard, M., McCarthy, S., Turner, I., Randall, J. C., Carneiro, M., Jmthibault79, Dkj, Tan, A., Reinders, Kirkmcclure, Simpson, J., Liddle, J., Ryan, D., . . . Elghraoui, A. (2017). nathanweeks/htslib-openmp: openmp-cluster_computing. Zenodo (CERN European Organization for Nuclear Research). https://doi.org/10.5281/zenodo.262161

MLA 9

Pd3, , et al. “nathanweeks/htslib-openmp: openmp-cluster_computing.” Zenodo (CERN European Organization for Nuclear Research), 2017, https://doi.org/10.5281/zenodo.262161.

Chicago

Pd3, John Marshall, James Bonfield, Heng Li, Daviesrob, Nathan T. Weeks, Martin Pollard, et al. 2017. “nathanweeks/htslib-openmp: openmp-cluster_computing.” Zenodo (CERN European Organization for Nuclear Research). https://doi.org/10.5281/zenodo.262161.

Harvard

Pd3 et al. (2017) ‘nathanweeks/htslib-openmp: openmp-cluster_computing’, Zenodo (CERN European Organization for Nuclear Research). Available at: https://doi.org/10.5281/zenodo.262161.

BibTeX

@misc{pd32017nathanweeks,
  title = {{nathanweeks/htslib-openmp: openmp-cluster_computing}},
  author = {Pd3 and Marshall, John and Bonfield, James and Li, Heng and Daviesrob and Weeks, Nathan T. and Pollard, Martin and McCarthy, Shane and Turner, Isaac and Randall, Joshua C. and Carneiro, Mauricio and Jmthibault79 and Dkj and Tan, Adrian and Reinders and Kirkmcclure and Simpson, Jared and Liddle, Jennifer and Ryan, Devon and Ryan10X and Shirley, Matt and Squire, Kevin and Gururaj, Karthik and Spaltenstein, Joël and Piper, Jason and Droazen and Garcia, Cristina Yenyxe Gonzalez and Tarasov, Artem and Masella, Andre and Elghraoui, Afif},
  journal = {Zenodo (CERN European Organization for Nuclear Research)},
  year = {2017},
  doi = {10.5281/zenodo.262161}
}

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