Shaokun An · Zenodo (CERN European Organization for Nuclear Research) · 2025
This release contains the complete implementation of scCausalVI, a causality-aware generative model for disentangling single-cell perturbation responses. The software enables causal inference of treatment effects at single-cell resolution and performs cross-condition in silico predictions. This version corresponds to the code used in manuscript. The package includes model implementation, and analysis scripts for reproducing all results presented in the paper.
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Jannick Borowitz · Zenodo (CERN European Organization for Nuclear Research) · 2025
This release includes the minor updates and fixes made during the peer review process. Our source code is permanently archived at https://zenodo.org/records/17174408 .
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Shaokun An · Zenodo (CERN European Organization for Nuclear Research) · 2025
This release contains the complete implementation of scCausalVI, a causality-aware generative model for disentangling single-cell perturbation responses. The software enables causal inference of treatment effects at single-cell resolution and performs cross-condition in silico predictions. This version corresponds to the code used in manuscript. The package includes model implementation, and analysis scripts for reproducing all results presented in the paper.
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Jannick Borowitz · Zenodo (CERN European Organization for Nuclear Research) · 2025
Latest release of kadisredu-reproducibility
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Jannick Borowitz · Zenodo (CERN European Organization for Nuclear Research) · 2025
This release also includes a version with cloned submodules and an additional SUBMODULES.txt file listing their versions. Therefore, running sh 02_fetch_algorithm.sh is not necessary.
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Data and knowledge in a changing world · 2007
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Anne M. Jensen (21680875), Richard J. Stevens (9854082), Amanda J. Burls (21680878) · Figshare · 2025
Scatterplot of MRT Accuracy vs. Participant. (A) by Practitioner, (B) by TP.
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Catherine Mooney (76525), Rana Raoof (839747), Hany El-Naggar (839748) et al. · Figshare · 2016
<p>Pairwise scatterplot of unnormalised data after filtering by CqConf and AmpScore, with no imputing of missing values. 122 miRNA were detected in sample R1 and 128 miRNA were detected in sample R2, 91 were common to both. (a) Ct > 35 are not included in the calculation of the correlation (b) Ct > 25 are not included in the calculation of the correlation.</p>
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Reda Alhajj, Jon Rokne · 2018
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Public Domain · Definitions · 2019
Ope n Pe e r Re v ie w on Qe ios
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Sander Van Der Burg · 2010
Sander van der Burg Deploying.NET applications with the Nix package manager Nix deployment system Nix is a package manager, with some distinct features: Stores components in isolation from each other Allows using multiple variants/versions safely next to each other Builds components from declarative specifications
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Bruce C. Gibb · Nature Chemistry · 2014
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Patrick T. Holland · IUPAC Standards Online · 2016
The glossary contains definitions of over 270 terms frequently used in relation to the chemistry, regulation and use of pesticides. A wide range of disciplines are involved in this field and the glossary was developed as a step in facilitating communication between researchers, government regulatory authorities and chemists in associated professional areas. The range of terms includes pesticide residues, sampling for analysis, good laboratory practice, metabolism, environmental fate, effects on ecosystems, computer simulation models, toxicology and risk assessment.
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Martin Hunt · OSF Preprints (OSF Preprints) · 2024
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F.R. Rosendaal, P.H. Reitsma · Journal of Thrombosis and Haemostasis · 2017
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Marcia McNutt · Science · 2014
Science advances on a foundation of trusted discoveries. Reproducing an experiment is one important approach that scientists use to gain confidence in their conclusions. Recently, the scientific community was shaken by reports that a troubling proportion of peer-reviewed preclinical studies are not reproducible. Because confidence in results is of paramount importance to the broad scientific community, we are announcing new initiatives to increase confidence in the studies published in Science . For preclinical studies (one of the targets of recent concern), we will be adopting recommendations of the U.S. National Institute of Neurological Disorders and Stroke (NINDS) for increasing transparency. * Authors will indicate whether there was a pre-experimental plan for data handling (such as how to deal with outliers), whether they conducted a sample size estimation to ensure a sufficient signal-to-noise ratio, whether samples were treated randomly, and whether the experimenter was blind to the conduct of the experiment. These criteria will be included in our author guidelines.
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John E. Boylan · IMA Journal of Management Mathematics · 2015
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John Proudfoot, Olivier Nosjean, Jan Blanchard et al. · IUPAC Standards Online · 2016
Biomolecular screening is now a crucial component of the drug discovery process, and this glossary will be of use to practitioners in the field of screening and to those who interact with the screening community. The glossary contains definitions related to various aspects of the screening process such as assay types, data handling, and relevant technologies. Many of the terms used in this discipline are not covered by existing glossaries, and where they are, the definitions are often not appropriate for this field. Where appropriate, this document provides new or modified definitions to better reflect the new context. The field of biomolecular screening is multidisciplinary in nature, and this glossary, containing authoritative definitions, will be useful not only for regular practitioners, but also for those who make use of data generated during the screening process.
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B. Wang, Dong‐Sheng Jeng · 2026
<strong class="journal-contentHeaderColor">Abstract.</strong> This study develops a hydro–mechanical–chemical (HMC) framework for simulating reactive solute migration in near-saturated, deformable porous media. The model couples the pore-water mass balance, force equilibrium, and advection–dispersion equations, and further incorporates a flexible geochemical reaction module to address both single-reaction and multi-component, multi-mineral systems. Numerical results indicate that deformation, mechanical loading, saturation, and mineral reactions jointly control the distribution and evolution of the solute. Compression and stronger mechanical loads accelerate solute transport in the early stage but later hinder migration as the pore structure tightens. Moreover, reduced saturation promotes concentration build-up by enhancing advective transport and limiting the ability of the aqueous phase to dilute accumulated solutes. The framework improves the predictive capability for long-term plume behaviour and mineral alteration in reactive porous systems where mechanical, hydraulic, and geochemical processes interact.
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National Cancer Institute · Definitions · 2020
Ope n Pe e r Re v ie w on Qe ios
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