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About 10,000 papers for “sequence alignment”

Sequence alignment

Wang, Wenqiang · Figshare · 2021

sequence alignment of viral receptor

Cited by 0Open access

Sequence Alignment

Julie Thompson, Olivier Poch · Encyclopedia of Life Sciences · 2006

Abstract Definition sequence comparison or alignment is the cornerstone of bioinformatics, providing the basis for sequence database searching, three‐dimensional structure modeling and evolutionary studies. A sequence alignment shows how a set of sequences may be related by identifying and arranging in columns the structurally and functionally equivalent residues common to all the sequences.

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Sequence alignment.

Stefano Muscat (14493251), Gianvito Grasso (636822), Leonardo Scapozza (102177) et al. · Figshare · 2023

<p>Sequence alignment of cytochrome b of T. cruzi, and G. gallus.</p> <p>(TIFF)</p>

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Sequence alignment.

Stephen J. Brokx (210058), Amy K. Wernimont (210062), Aiping Dong (141147) et al. · Figshare · 2015

<p>Sequence alignment of the three <i>C. parvum</i> 14-3-3 proteins. Sequence alignment shows positions of the helices. Alignment was performed using ClustalW. The key Arg-Arg-Tyr triad is highlighted by boxes. Of note is the absence of a C-terminus in Cp14a.</p>

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Sequence Alignment

Stefanie C Wolski (50291), Jochen Kuper (50292), Petra Hänzelmann (50293) et al. · Figshare · 2015

<p>Sequence alignment of five different XPD proteins. From top to bottom: XPD from T. acidophilum, human, mouse, Arabidopsis thaliana, and Saccharomyces cerevisiae. Secondary structure elements are indicated above the sequence and are color coded according to their domains; arrows indicate β-strands and coils α-helices. Helicase motifs are shown as gray boxes. Mutations leading to xeroderma pigmentosum, Cockayne syndrome, or trichothiodystrophy are indicated below the sequence and are colored in blue, green, and grey, referring to their occurrence in trichothiodystrophy, xeroderma pigmentosum, or xeroderma pigmentosum/Cockayne syndrome patients, respectively. Conserved residues are boxed, and strictly conserved residues are shown in white with a red background. The four cysteines that coordinate the 4Fe4S cluster are highlighted in green surrounded by thick blue boxes.</p>

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Sequence alignment.

J. Curt Stager (700178), Lee Ann Sporn (700179), Melanie Johnson (700180) et al. · Figshare · 2015

<p>Cloned insert with yellow perch mitochondrial cytochrome oxidase subunit 1 (GenBank voucher PEFL-ON-BLAC-4–3).</p>

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Sequence alignment

Chia, Nicholas Lee-Ping · OhioLink ETD Center (Ohio Library and Information Network) · 2006

Sequence alignment is the most widely used tool in molecular biology today.It's uses include a variety of tasks from the identification of new genes to the construction of phylogenetic trees.An integral part any sequence alignments is the interpretation of the resulting scores, or assessing the significance of alignment scores.This task requires that we first understand the distribution of scores between pairs of random sequences.This problem is statistical in nature, and thus can be approached using methods from statistical physics.In this thesis, I will explore three problems related to the significance assessment of sequence alignment scores.The first two of these problems will address issues in sequence alignment directly, while the last work focuses on the Asymmetric Exclusion Process, a physical system that can be mapped onto a sequence alignment problem.This work grew out of the close relationship between the statistics of the Asymmetric Exclusion Process, and my other work on the statistical properties of sequence alignments.More specifically, in the first topic, I will examine the commonly used disordered bonds, or Bernoulli randomness, approximation and it's effect on sequence alignment scores.Because this approximation is used in much of the theoretical studies of sequence alignment, it is important to examine the effect this approximation has on the statistics of alignment scores.

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Sequence alignment.

Zhengyu Jiang (211582), Amy C. Lossie (211585), Todd J. Applegate (211591) · Figshare · 2015

<p>A: sequence alignments for chicken <i>TFF2</i> cDNA with human and mouse. B: Amino acid sequence alignment and analysis for chicken with predicted sequences of other avian species and human and mouse; domains are indicated below aligned sequences. PTD: trefoil domain (P domain); locations of conserved Cys bonds and secondary structural element: α-helixes, β-sheets and loops are indicated.</p>

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Sequence alignment

Wenqiang Wang · Figshare · 2021

sequence alignment of viral receptor

Cited by 0Open access

Sequence alignment.

Letizia Chiodo (774871), Thérèse E. Malliavin (5664436), Luca Maragliano (523114) et al. · Figshare · 2015

<p>Alignment, produced by t_coffee 9.01 [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133011#pone.0133011.ref064" target="_blank">64</a>], of the <i>α</i>7 nAChR sequence after replacing the cytoplasmic region by a tripeptide linker and of the sequence of the chimera protein used as template. The N and C terminal regions of <i>α</i>7 nAChR have been removed due to poor alignments (data not shown) with other human <i>α</i> subunits of nAChR. The UniProt sequence P36544 was used for the <i>α</i>7 nAChR.</p>

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Sequence alignment.

Carina Fischer (393212), Martina Hofmann (699544), Martin Danzer (699545) et al. · Figshare · 2015

<p>Comparison of a partial genome sequence in ORF2 from HEV positive samples. Dots indicate identity to the consensus sequence.</p>

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Sequence Alignment

2010

The similarity (or rather dissimilarity) between two strings can be measured in the number of operations needed to transform one into the other. There are three basic operations we consider here: changing one character into another, inserting a character, or deleting a character. In the context of molecular biology

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Sequence alignment.

Marcell Crispim (4752069), Ignasi Bofill Verdaguer (12440769), Agustín Hernández (4752078) et al. · Figshare · 2024

<p>ClustalW Multiple alignment of PolK candidate amino acid sequence, predicted in <i>P</i>. <i>falciparum</i> NF54 strain against sequences with prenol kinase prediction in UniProt database. PolK: prenol kinase, PhyK: phytol kinase, FolK: farnesol kinase. PfPolK (<i>P</i>. <i>falciparum</i> NF54, D0VEH1), SsPhyK (<i>Synechocystis sp</i>., P74653), GmPhyK (<i>Glycine max</i>, Q2N2K1), ZmPhyK (<i>Zea mays</i>, Q2N2K4), OsPhyK (<i>Oryza sativa</i>, Q7XR51), AtPhyK (<i>Arabidopsis thaliana</i>, Q9LZ76), AtFolK (<i>Arabidopsis thaliana</i>, Q67ZM7). Yellow indicates similarity and red indicates identity.</p> <p>(TIF)</p>

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