Web interface.
Jenny Knapp (363533), Sylvie Damy (4487548), Jonathan Brillaud (4487560) et al. · Figshare · 2017
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Web interface.
Ashis Saha (504938), Minji Jeon (765687), Aik Choon Tan (82343) et al. · Figshare · 2015
<p>The most common scenario involves a user uploading a gene-expression file, a class-label file, and if necessary a chip file, and then clicking the “Analyze & Explore” button to get the results. The website provides the user a link that shows the results once the analysis is completed.</p>
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Web interface.
Mara L. Hartsperger (165058), Robert Strache (360052), Volker Stümpflen (13745) · Figshare · 2015
<p>An illustration of the user-friendly web-interface for HiNO is shown. The user can upload (<b>A</b>) a text file containing the representation of any directed network. Afterwards (<b>B</b>) the user retrieves information about node and edge types within the uploaded network and can decide which types should be used for the hierarchy extraction. Additionally, TF annotation can be added for human or mouse networks. (<b>C</b>) Information about the extracted hierarchical structure can be downloaded either as text file or in a graphical representation.</p>
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CHARM Web-Interface
Nirmal G. Tiwari · Digital Commons - USU (Utah State University) · 2021
This project presents a web-based interface for Child Health Advanced Record Management System (CHARM) users that provides easy and fast access to child information from multiple data sources. This project’s overarching goal is to integrate child information from different participating programs under a single interface to allow any CHARM user (including users not belonging to any particular participating program) to view information from different participating programs. To that end, the interface allows any registered CHARM user to access child information from multiple data sources without the user being a registered member of any particular participating program. Thus, the user can access information from a universal portal without the need of registering with any specific participating program. The user interfaces were designed and customized to make interaction with the CHARM WebIF convenient and user-friendly. This report discusses the application of the CHARM WebIF in the CHARM environment along with its user-friendly interface design.
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MetaRouter web interface
Pazos, Florencio, Guijas, David, Valencia, Alfonso et al. · Figshare · 2011
<b>Copyright information:</b>Taken from "MetaRouter: bioinformatics for bioremediation"Nucleic Acids Research 2004 ;33(Database Issue):D588-D592.Published online 17 Dec 2004 PMCID:PMC540022.Copyright © 2005 Oxford University Press Some screenshots of a typical session using MetaRouter through its web interface are shown. All the dynamic HTML pages generated querying the database or using the system for locating pathways are linked between themselves and with external databases. (1) Searching for reactions; (2) reaction information; (3) chemical compound information; (4) chemical compound canonical 3D structure; (5) enzyme information; (6) linking to external databases; (7) possible pathways for the biodegradation of Atrazine; (8) controlling the representation of biodegradative pathways; and (9) editing the properties of a chemical compound.
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Database web interface
Büssow, Konrad, Quedenau, Claudia, Sievert, Volker et al. · Figshare · 2011
<b>Copyright information:</b>Taken from "A catalog of human cDNA expression clones and its application to structural genomics"Genome Biology 2004;5(9):R71-R71.Published online 17 Aug 2004PMCID:PMC522878.Copyright © 2004 Büssow et al.; licensee BioMed Central Ltd. The search result for the term 'adenylate' is shown.
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Omnicrobe web interface.
Sandra Dérozier (2586025), Robert Bossy (14485447), Louise Deléger (14485450) et al. · Figshare · 2023
<p>Republished from <a href="http://omnicrobe.migale.inrae.fr/" target="_blank">http://omnicrobe.migale.inrae.fr</a> under a CC BY license, with permission from INRAE MaIAGE, original copyright 2022.</p>
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DS3 Web Interface
Kevin Wong, Gordon W. Romney · ScholarsArchive (Brigham Young University) · 2013
As digital media storage is growing ever more popular, security of this data is becoming more and more important. Intruders can relatively easily alter digital files and documents. Several customers, such as the Harold B. Lee Library, the archivist of the Dead Sea Scrolls, and the Director of the Center for Earth Remote Sensing, need the assurance of data integrity, as the users of these files require unaltered content. A digital signature signing server can receive a digital file, digitally sign it, and store the digital signature with the original file. When needed, the server can regenerate the signature and compare it with the original signature. If these signatures match, it would ensure file integrity. If not, it would mean that the file has been tampered with.
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Web Services Interface
Apress eBooks · 2006
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DS3 Web Interface
Wong, Kevin, Romney, Dr. Gordon · ScholarsArchive (Brigham Young University) · 2013
As digital media storage is growing ever more popular, security of this data is becoming more and more important. Intruders can relatively easily alter digital files and documents. Several customers, such as the Harold B. Lee Library, the archivist of the Dead Sea Scrolls, and the Director of the Center for Earth Remote Sensing, need the assurance of data integrity, as the users of these files require unaltered content. A digital signature signing server can receive a digital file, digitally sign it, and store the digital signature with the original file. When needed, the server can regenerate the signature and compare it with the original signature. If these signatures match, it would ensure file integrity. If not, it would mean that the file has been tampered with.
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CKB web interface.
Arul Prakasam Peter (787080), Karthick Lakshmanan (787081), Shylajanaciyar Mohandass (787082) et al. · Figshare · 2015
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Genes2Networks web interface
Seth Berger, Jeremy M Posner, Avi Ma’ayan · Figshare · 2011
<b>Copyright information:</b>Taken from "Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases"http://www.biomedcentral.com/1471-2105/8/372BMC Bioinformatics 2007;8():372-372.Published online 4 Oct 2007PMCID:PMC2082048. The interface allows users to input a list of human Entrez Gene symbols, entered in a textbox or through a text file (top left). As genes are added, using the merged consolidated reference network made of different protein-protein interaction network databases, the program outputs a network map that visualize known interactions that "connect" the list of gene symbols from the seed list, and a statistical report that ranks intermediates based on their specificity to interact with the seed list.
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CalderaCast Web Interface
Schmidt, Steven, Sundarrajan, Manoj Kumar Cebol · DOE Pacific Northwest National Laboratory (PNNL) Repository · 2025
CalderaCast may be accessed as a web-based tool at the first link in the references section of this dataset. All of the necessary datasets to run the tool are built into the simulation software running behind the web interface. These input datasets are referenced by the additional links in the references section below. Many of those datasets are taken into machine-learning algorithms by the Caldera team and heavily processed to create internal datasets, which are then relied upon by the simulation to produce individual results. These internal datasets are not accessible and are not necessary for use of the CalderaCast tool.
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AOE web interface.
Hidemasa Bono (3011) · Figshare · 2020
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ReVisE web interface.
Stepan Orlov (11191558), Alexey Kuzin (11191561), Alexey Zhuravlev (11191564) et al. · Figshare · 2021
<p>Area at the top contains drop-down lists to choose a problem and a primary field, timeline navigation elements, camera positioning buttons, video stream sharing and settings buttons. Left panel contains elements to pick visualization algorithm and control its parameters. Central area displays rendered scene. Mouse can be used to pan, zoom, and rotate the scene interactively.</p>
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Genes2Networks web interface
Berger, Seth I, Posner, Jeremy M, Ma'ayan, Avi · Figshare · 2011
<b>Copyright information:</b>Taken from "Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases"http://www.biomedcentral.com/1471-2105/8/372BMC Bioinformatics 2007;8():372-372.Published online 4 Oct 2007PMCID:PMC2082048. The interface allows users to input a list of human Entrez Gene symbols, entered in a textbox or through a text file (top left). As genes are added, using the merged consolidated reference network made of different protein-protein interaction network databases, the program outputs a network map that visualize known interactions that "connect" the list of gene symbols from the seed list, and a statistical report that ranks intermediates based on their specificity to interact with the seed list.
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DeconSeq web interface.
Robert Schmieder (160056), Robert Edwards (1230) · Figshare · 2015
<p>Screenshots of the DeconSeq web interface at different steps of the data processing. The user can either input a data ID to access already processed data (A) or input a new sequence file and select the database (B). After processing the data, the results are shown including the input information (C), Coverage vs. Identity plots for “remove” databases (D) and “retain” databases (E), classification of input data into “clean”, “contamination”, and “both” (F), and download options (G).</p>
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Web Services Interface
Apress eBooks · 2006
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CCTop web interface.
Manuel Stemmer (471879), Thomas Thumberger (729681), Maria del Sol Keyer (729682) et al. · Figshare · 2015
<p>(A) Main page containing the input fields to customize the identification of sgRNA target sites and the off-target prediction. (B) Results page providing detailed information of all identified sgRNA target sites.</p>
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Interactive web interface.
Remi van Trijp (12850477), Katrien Beuls (391025), Paul Van Eecke (9031688) · Figshare · 2022
<p>The Babel Interactive Web Interface has been integrated into the FCG Editor and is accessible at <a href="http://localhost:8008" target="_blank">http://localhost:8008</a>.</p>
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