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article · 2005

Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach

Md. Altaf‐Ul‐Amin, T. Koma, Ken Kurokawa, Shigehiko Kanaya

Cited by 2Abstract and details only

Abstract

This paper presents an approach for prediction of protein functions based on protein-protein interaction networks. For the purpose of prediction, we not only consider the interactions of functionunknown proteins with function-known proteins but also the interactions of function-unknown proteins with function-unknown proteins. Prediction is performed in the context of the entire network. This is a min-cut approach because we try to assign function-unknown proteins to different functional groups in such a way so that the number of intergroup interactions becomes the minimum in the whole network. Also, we show some evaluation results by applying the proposed method to yeast Saccharomyces cerevisiae protein-protein interaction network. However, this is a general method and can be applied to other organisms alike.

Cite this paper

APA 7

Altaf‐Ul‐Amin, M., Koma, T., Kurokawa, K., & Kanaya, S. (2005). Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach. https://doi.org/10.1109/icde.2005.260

MLA 9

Altaf‐Ul‐Amin, Md., et al. “Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach.” vol. 18, 2005, p. 1156, https://doi.org/10.1109/icde.2005.260.

Chicago

Altaf‐Ul‐Amin, Md., T. Koma, Ken Kurokawa, and Shigehiko Kanaya. 2005. “Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach.” https://doi.org/10.1109/icde.2005.260.

Harvard

Altaf‐Ul‐Amin, M. et al. (2005) ‘Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach’. Available at: https://doi.org/10.1109/icde.2005.260.

BibTeX
@article{altafulamin2005prediction,
  title = {{Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach}},
  author = {Altaf‐Ul‐Amin, Md. and Koma, T. and Kurokawa, Ken and Kanaya, Shigehiko},
  volume = {18},
  pages = {1156},
  year = {2005},
  doi = {10.1109/icde.2005.260}
}

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