article · Greater South Information System · 2019

BrAPI—an application programming interface for plant breeding applications

Peter J. Selby, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar Eduardo Benites Alfaro, Clay Birkett, Viana C Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Costa, Jeremy D. Edwards, Richard Finkers, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian, Patrick König, Jack Elendil B Lagare, Matthias Lange, Marie‐Angélique Laporte, Pierre Larmande, David LeBauer, David Lyon, David Marshall, David Matthews, Iain Milne, Naymesh Mistry, Nicolás Morales, Lukas A. Mueller, Pascal Neveu, Evangelia Papoutsoglou, Brian Pearce, Ivan Perez-Masias, Cyril Pommier, Ricardo H. Ramírez-González, Abhishek Rathore, Angel Manica Raquel, Sebastian Raubach, Trevor W. Rife, Kelly R. Robbins, Mathieu Rouard, Chaitanya Sarma, Uwe Scholz, Guilhem Sempéré, Paul Shaw, Reinhard Simon, Nahuel Soldevilla and 5 more

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Abstract

Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data are often stored on multiple systems. As analyses of interest increasingly require aggregation of datasets from diverse sources, data exchange between disparate systems becomes a challenge.To facilitate interoperability among breeding applications, we present the public plant Breeding Application Programming Interface (BrAPI). BrAPI is a standardized web service API specification. The development of BrAPI is a collaborative, community-based initiative involving a growing global community of over a hundred participants representing several dozen institutions and companies. Development of such a standard is recognized as critical to a number of important large breeding system initiatives as a foundational technology. The focus of the first version of the API is on providing services for connecting systems and retrieving basic breeding data including germplasm, study, observation, and marker data. A number of BrAPI-enabled applications, termed BrAPPs, have been written, that take advantage of the emerging support of BrAPI by many databases.More information on BrAPI, including links to the specification, test suites, BrAPPs, and sample implementations is available at https://brapi.org/. The BrAPI specification and the developer tools are provided as free and open source.

Cite this paper

APA 7

Selby, P. J., Abbeloos, R., Backlund, J. E., Salido, M. B., Bauchet, G., Alfaro, O. E. B., Birkett, C., Calaminos, V. C., Carceller, P., Cornut, G., Costa, B., Edwards, J. D., Finkers, R., Gao, S. Y., Ghaffar, M., Glaser, P., Guignon, V., Hok, P., Kilian, A., . . . Soldevilla, N. (2019). BrAPI—an application programming interface for plant breeding applications. Greater South Information System. https://doi.org/10.60692/gcpzr-0vv60

MLA 9

Selby, Peter J., et al. “BrAPI—an application programming interface for plant breeding applications.” Greater South Information System, 2019, https://doi.org/10.60692/gcpzr-0vv60.

Chicago

Selby, Peter J., Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar Eduardo Benites Alfaro, Clay Birkett, et al. 2019. “BrAPI—an application programming interface for plant breeding applications.” Greater South Information System. https://doi.org/10.60692/gcpzr-0vv60.

Harvard

Selby, P.J. et al. (2019) ‘BrAPI—an application programming interface for plant breeding applications’, Greater South Information System. Available at: https://doi.org/10.60692/gcpzr-0vv60.

BibTeX

@article{selby2019brapi,
  title = {{BrAPI—an application programming interface for plant breeding applications}},
  author = {Selby, Peter J. and Abbeloos, Rafael and Backlund, Jan Erik and Salido, Martin Basterrechea and Bauchet, Guillaume and Alfaro, Omar Eduardo Benites and Birkett, Clay and Calaminos, Viana C and Carceller, Pierre and Cornut, Guillaume and Costa, Bruno and Edwards, Jeremy D. and Finkers, Richard and Gao, Star Yanxin and Ghaffar, Mehmood and Glaser, Philip and Guignon, Valentin and Hok, Puthick and Kilian, Andrzej and König, Patrick and Lagare, Jack Elendil B and Lange, Matthias and Laporte, Marie‐Angélique and Larmande, Pierre and LeBauer, David and Lyon, David and Marshall, David and Matthews, David and Milne, Iain and Mistry, Naymesh and Morales, Nicolás and Mueller, Lukas A. and Neveu, Pascal and Papoutsoglou, Evangelia and Pearce, Brian and Perez-Masias, Ivan and Pommier, Cyril and Ramírez-González, Ricardo H. and Rathore, Abhishek and Raquel, Angel Manica and Raubach, Sebastian and Rife, Trevor W. and Robbins, Kelly R. and Rouard, Mathieu and Sarma, Chaitanya and Scholz, Uwe and Sempéré, Guilhem and Shaw, Paul and Simon, Reinhard and Soldevilla, Nahuel and others},
  journal = {Greater South Information System},
  year = {2019},
  doi = {10.60692/gcpzr-0vv60}
}

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