dataset · Figshare · 2025

FastAAI Codebase

Gerhardt, Kenji, Ruiz-Perez, Carlos, Konstantinidis, Konstantinos, Rodriguez-R, Luis Miguel

Cited by 0Open access

Abstract

FastAAI is an ultrafast estimator of whole-genome aggregate amino acid identity (AAI). FastAAI utilizes tetramer similarities across matched pairs of marker genes to estimate AAI in a computationally simple manner, achieving orders of magnitude speedup over alignment and phylogenetic approaches with a minimal lack of accuracy.

Cite this paper

APA 7

Gerhardt, K., Ruiz-Perez, C., Konstantinidis, K., & Rodriguez-R, L. M. (2025). FastAAI Codebase. Figshare. https://doi.org/10.6084/m9.figshare.28774625.v1

MLA 9

Gerhardt, Kenji, et al. “FastAAI Codebase.” Figshare, 2025, https://doi.org/10.6084/m9.figshare.28774625.v1.

Chicago

Gerhardt, Kenji, Carlos Ruiz-Perez, Konstantinos Konstantinidis, and Luis Miguel Rodriguez-R. 2025. “FastAAI Codebase.” Figshare. https://doi.org/10.6084/m9.figshare.28774625.v1.

Harvard

Gerhardt, K. et al. (2025) ‘FastAAI Codebase’, Figshare. Available at: https://doi.org/10.6084/m9.figshare.28774625.v1.

BibTeX

@misc{gerhardt2025fastaai,
  title = {{FastAAI Codebase}},
  author = {Gerhardt, Kenji and Ruiz-Perez, Carlos and Konstantinidis, Konstantinos and Rodriguez-R, Luis Miguel},
  journal = {Figshare},
  year = {2025},
  doi = {10.6084/m9.figshare.28774625.v1}
}

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