dataset · Figshare · 2020
Pinus pinaster drought response transcriptome (PpDR transcriptome)
María, Nuria De, M. Ángeles Guevara, Perdiguero, Pedro, M. Dolores Vélez, J. Antonio Cabezas, López-Hinojosa, Miriam, Li, Zhen, L. Manuel Díaz, Pizarro, Alberto, J. Antonio Mancha, Sterck, Lieven, Sánchez-Gómez, David, Miguel, Célia, Collada, Carmen, Díaz-Sala, Carmen, Cervera, María Teresa
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Abstract
The PpDR transcriptome joins information from previous <i>Pinus pinaster</i> transcriptome together with 454 sequencing of 12 libraries from different organs from plants subjected to well watered or water stress regime. Sequencing yielded a total of 2,416,362 reads, which were mapped against the ProCoGen reference transcriptome containing 191,544 transcripts. Unmapped reads were used for <i>de novo </i>assembly, allowing the identification of 8,700 newly assembled transcripts longer than 200bp, which were added to the reference transcriptome to obtain the “<i>Pinus pinaster </i>drought response transcriptome” (PpDR transcriptome).<br>Files; Sequences in fasta format, Transcripts information table, Transcriptome annotation and Blast2GO file.<br>Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, ES.<br><br>
Cite this paper
María, N. D., Guevara, M. Á., Perdiguero, P., Vélez, M. D., Cabezas, J. A., López-Hinojosa, M., Li, Z., Díaz, L. M., Pizarro, A., Mancha, J. A., Sterck, L., Sánchez-Gómez, D., Miguel, C., Collada, C., Díaz-Sala, C., & Cervera, M. T. (2020). Pinus pinaster drought response transcriptome (PpDR transcriptome). Figshare. https://doi.org/10.6084/m9.figshare.12328979.v1
María, Nuria De, et al. “Pinus pinaster drought response transcriptome (PpDR transcriptome).” Figshare, 2020, https://doi.org/10.6084/m9.figshare.12328979.v1.
María, Nuria De, M. Ángeles Guevara, Pedro Perdiguero, M. Dolores Vélez, J. Antonio Cabezas, Miriam López-Hinojosa, Zhen Li, et al. 2020. “Pinus pinaster drought response transcriptome (PpDR transcriptome).” Figshare. https://doi.org/10.6084/m9.figshare.12328979.v1.
María, N.D. et al. (2020) ‘Pinus pinaster drought response transcriptome (PpDR transcriptome)’, Figshare. Available at: https://doi.org/10.6084/m9.figshare.12328979.v1.
@misc{maria2020pinus,
title = {{Pinus pinaster drought response transcriptome (PpDR transcriptome)}},
author = {María, Nuria De and Guevara, M. Ángeles and Perdiguero, Pedro and Vélez, M. Dolores and Cabezas, J. Antonio and López-Hinojosa, Miriam and Li, Zhen and Díaz, L. Manuel and Pizarro, Alberto and Mancha, J. Antonio and Sterck, Lieven and Sánchez-Gómez, David and Miguel, Célia and Collada, Carmen and Díaz-Sala, Carmen and Cervera, María Teresa},
journal = {Figshare},
year = {2020},
doi = {10.6084/m9.figshare.12328979.v1}
}Made from the index record. Check names, capitalisation and page numbers against the paper. Need another style? AI for Research has over 10,000.