“Transcriptome” papers · AI for Research

Transcriptome

Chen, Yifan, Zhang, Li, Chen, Yan et al. · Figshare · 2025

we explored the antimicrobial properties and mechanisms of 4-(4-hydroxyphenyl)-2-butanone against F. solani through transcriptomic analyses, providing a foundation for the development of biocontrol products.

Cited by 0Open access

Transcriptome

John H. Duffus, Monica Nordberg, Douglas M. Templeton · IUPAC Standards Online · 2016

This glossary, a revision of the IUPAC “Glossary for Chemists of Terms Used in Toxicology” [Pure Appl. Chem.65, 2003 (1993)] incorporating new and redefined terms from the “Glossary of Terms Used in Toxicokinetics” [Pure Appl. Chem.76, 1033 (2004)], contains definitions and explanatory notes, if needed, for terms frequently used in the multidisciplinary field of toxicology. The glossary is compiled primarily for those scientists and others who now find themselves working in toxicology or requiring a knowledge of the subject, especially for hazard and risk assessment. Many medical terms are included because of their frequent occurrence in the toxicological literature. There are three annexes, one containing a list of abbreviations and acronyms used in toxicology, one containing a list of abbreviations and acronyms used by international bodies and by legislation relevant to toxicology and chemical safety, and one describing the classification of carcinogenicity according to the weight of evidence available.

Cited by 0Open access

Transcriptome

林姿伸(Zishen Lin) · China National GeneBank DataBase · 2025

Transcriptome sequencing in different treated Lactobacillus vaginalis

Cited by 0Open access

Transcriptome

Frank Gaillard, Francesco Sciacca, Rohit Sharma · Radiopaedia.org · 2014

The transcriptome represents the portion of the genetic code of a cell which is transcribed into RNA (mRNA, tRNA, rRNA and non-coding RNA). It can be used to understand gene expression and signaling pathways.

Cited by 0Open access

Transcriptome

Yuhong Liu · OSF Preprints (OSF Preprints) · 2023

Cited by 0

Transcriptome

Marc D. Binder, Nobutaka Hirokawa, Uwe Windhorst · 2008

Cited by 0

Transcriptome

National Cancer Institute · Definitions · 2020

Cited by 0Open access

transcriptome

Zbynek Bozdech, Hagai Ginsburg · 2004

© 2004 Bozdech and Ginsburg; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article&apos;s original URL. The intraerythrocytic malaria parasite is under constant oxidative stress originating both from endogenous and exogenous processes. The parasite is endowed with a complete network of enzymes and proteins that protect it from those threats, but also uses redox activities to regulate enzyme activities. In the present analysis, the transcription of the genes coding for the antioxidant defense elements are viewed in the time-frame of the intraerythrocytic cycle. Time-dependent transcription data were taken from the transcriptome of the human malaria parasite Plasmodium falciparum. Whereas for several processes the transcription of the many participating genes is coordinated, in the present case there are some outstanding deviations where gene products that utilize glutathione or thioredoxin are transcribed before the genes coding for elements that control the levels of those substrates are transcribed. Such insights may hint to novel, non-classical pathways that necessitate further investigations.

Cited by 0

Transcriptome

Dov Greenbaum, Jean‐Michel Claverie · Dictionary of Bioinformatics and Computational Biology · 2004

Cited by 0

transcriptome

Katarina Mandić, Ivan Sabol · Figshare · 2023

Sample collection protocolHNSCC patients with primary oral (O) and oropharyngeal (OP) tumors treated at the Clinical Hospital Dubrava, Zagreb, Croatia between 2015 and 2017 were enrolled in the study. All patients underwent surgery as primary treatment and 2 pieces of tumor tissue were collected. Samples were stored in 700 μL of G2 lysis buffer (Qiagen) or RNA later (Ambion) solutions for the isolation of DNA and RNA, respectively. Samples were stored at +4 °C and delivered to the laboratory at the end of the day where they were stored at −20 °C for up to 2 weeks before DNA and RNA isolation.Nucleic acid extraction protocolFor nucleic acid extraction, smaller (~20 mg) pieces of tumor tissue were used. The DNA was isolated with the EZ1 Biorobot using EZ1 DNA tissue kit (Qiagen) following the manufacturer’s protocol. The total RNA was isolated using miRNeasy mini kit (Qiagen) also following the manufacturer’s protocol. Both DNA and RNA quality and quantity were analyzed on nanospectrofotometer (Implen). Furthermore, RNA quality was assessed by Bioanalyser RNA6000 Nano kit (Agilent) to determine the RIN number.Nucleic acid library construction protocolLibrary preparation was performed using TrueSeq Stranded mRNA (Illumina) kit.Nucleic acid sequencing protocolSequencing was performed on Nextseq500 instrument using NextSeq HIGH 150 cycles (Illumina) reagents on high output flow cell in paired end mode.high throughput sequence alignment protocolAlignment and quantification was performed with salmon v1.5.0 tool and the GRCh37 (2013 release) reference.

Cited by 0Open access

Transcriptome

Chen, Yifan, Zhang, Li, Chen, Yan et al. · Figshare · 2025

we explored the antimicrobial properties and mechanisms of 4-(4-hydroxyphenyl)-2-butanone against F. solani through transcriptomic analyses, providing a foundation for the development of biocontrol products.

Cited by 0Open access

Transcriptome

2005

Cited by 0

transcriptome

Katarina Mandić, Ivan Sabol, Ivan Sabol · Figshare · 2023

Sample collection protocolHNSCC patients with primary oral (O) and oropharyngeal (OP) tumors treated at the Clinical Hospital Dubrava, Zagreb, Croatia between 2015 and 2017 were enrolled in the study. All patients underwent surgery as primary treatment and 2 pieces of tumor tissue were collected. Samples were stored in 700 μL of G2 lysis buffer (Qiagen) or RNA later (Ambion) solutions for the isolation of DNA and RNA, respectively. Samples were stored at +4 °C and delivered to the laboratory at the end of the day where they were stored at −20 °C for up to 2 weeks before DNA and RNA isolation.Nucleic acid extraction protocolFor nucleic acid extraction, smaller (~20 mg) pieces of tumor tissue were used. The DNA was isolated with the EZ1 Biorobot using EZ1 DNA tissue kit (Qiagen) following the manufacturer’s protocol. The total RNA was isolated using miRNeasy mini kit (Qiagen) also following the manufacturer’s protocol. Both DNA and RNA quality and quantity were analyzed on nanospectrofotometer (Implen). Furthermore, RNA quality was assessed by Bioanalyser RNA6000 Nano kit (Agilent) to determine the RIN number.Nucleic acid library construction protocolLibrary preparation was performed using TrueSeq Stranded mRNA (Illumina) kit.Nucleic acid sequencing protocolSequencing was performed on Nextseq500 instrument using NextSeq HIGH 150 cycles (Illumina) reagents on high output flow cell in paired end mode.high throughput sequence alignment protocolAlignment and quantification was performed with salmon v1.5.0 tool and the GRCh37 (2013 release) reference.

Cited by 0Open access

transcriptome

Mandić, Katarina, Sabol, Ivan, Sabol, Ivan · Figshare · 2023

Sample collection protocolHNSCC patients with primary oral (O) and oropharyngeal (OP) tumors treated at the Clinical Hospital Dubrava, Zagreb, Croatia between 2015 and 2017 were enrolled in the study. All patients underwent surgery as primary treatment and 2 pieces of tumor tissue were collected. Samples were stored in 700 μL of G2 lysis buffer (Qiagen) or RNA later (Ambion) solutions for the isolation of DNA and RNA, respectively. Samples were stored at +4 °C and delivered to the laboratory at the end of the day where they were stored at −20 °C for up to 2 weeks before DNA and RNA isolation.Nucleic acid extraction protocolFor nucleic acid extraction, smaller (~20 mg) pieces of tumor tissue were used. The DNA was isolated with the EZ1 Biorobot using EZ1 DNA tissue kit (Qiagen) following the manufacturer’s protocol. The total RNA was isolated using miRNeasy mini kit (Qiagen) also following the manufacturer’s protocol. Both DNA and RNA quality and quantity were analyzed on nanospectrofotometer (Implen). Furthermore, RNA quality was assessed by Bioanalyser RNA6000 Nano kit (Agilent) to determine the RIN number.Nucleic acid library construction protocolLibrary preparation was performed using TrueSeq Stranded mRNA (Illumina) kit.Nucleic acid sequencing protocolSequencing was performed on Nextseq500 instrument using NextSeq HIGH 150 cycles (Illumina) reagents on high output flow cell in paired end mode.high throughput sequence alignment protocolAlignment and quantification was performed with salmon v1.5.0 tool and the GRCh37 (2013 release) reference.

Cited by 0Open access

transcriptome

2025

Citation: 'transcriptome' in the IUPAC Compendium of Chemical Terminology, 5th ed.; International Union of Pure and Applied Chemistry; 2025. Online version 5.0.0, 2025. 10.1351/goldbook.16164 • License: The IUPAC Gold Book is licensed under Creative Commons Attribution-ShareAlike CC BY-SA 4.0 International for individual terms. Requests for commercial usage of the compendium should be directed to IUPAC.

Cited by 0Open access

Transcriptome

2008

Cited by 0

Pinus pinaster drought response transcriptome (PpDR transcriptome)

Nuria de María, M. Ángeles Guevara, Pedro Perdiguero et al. · Figshare · 2020

The PpDR transcriptome joins information from previous Pinus pinaster transcriptome together with 454 sequencing of 12 libraries from different organs from plants subjected to well watered or water stress regime. Sequencing yielded a total of 2,416,362 reads, which were mapped against the ProCoGen reference transcriptome containing 191,544 transcripts. Unmapped reads were used for de novo assembly, allowing the identification of 8,700 newly assembled transcripts longer than 200bp, which were added to the reference transcriptome to obtain the “Pinus pinaster drought response transcriptome” (PpDR transcriptome). Files; Sequences in fasta format, Transcripts information table, Transcriptome annotation and Blast2GO file. Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, ES.

Cited by 1Open access

Pinus pinaster drought response transcriptome (PpDR transcriptome)

María, Nuria De, M. Ángeles Guevara, Perdiguero, Pedro et al. · Figshare · 2020

The PpDR transcriptome joins information from previous Pinus pinaster transcriptome together with 454 sequencing of 12 libraries from different organs from plants subjected to well watered or water stress regime. Sequencing yielded a total of 2,416,362 reads, which were mapped against the ProCoGen reference transcriptome containing 191,544 transcripts. Unmapped reads were used for de novo assembly, allowing the identification of 8,700 newly assembled transcripts longer than 200bp, which were added to the reference transcriptome to obtain the “Pinus pinaster drought response transcriptome” (PpDR transcriptome). Files; Sequences in fasta format, Transcripts information table, Transcriptome annotation and Blast2GO file. Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, ES.

Cited by 0Open access

Transcriptome atlas

The Dictionary of Genomics, Transcriptomics and Proteomics · 2015

Cited by 0

Search 250 million research papers