article · Prodinra (INRA Bordeaux-Aquitaine) · 2019

BrAPI - an Application Programming Interface for Plant Breeding Applications.

Abbeloos, Rafael, Backlund, Jan Erik, Basterrechea Salido, Martin, Bauchet, Guillaume, Benites-Alfaro, Omar, Birkett, Clay, Calaminos, Viana C, Carceller, Pierre, Cornut, Guillaume, Vasques Costa, Bruno, Edwards, Jeremy D, Finkers, Richard, Gao, Star Yanxin, Ghaffar, Mehmood, Glaser, Philip, Guignon, Valentin, Hok, Puthick, Kilian, Andrzej, König, Patrick, Lagare, Jack Elendil B, Lange, Matthias, Laporte, Marie-Angélique, Larmande, Pierre, LeBauer, David, Lyon, David, Marshall, David, Matthews, Dave, Milne, Iain, Mistry, Naymesh, Morales, Nicolas, Mueller, Lukas, Neveu, Pascal, Papoutsoglou, Evangelia, Pearce, Brian, Perez-Masias, Ivan, Pommier, Cyril, Ramirez-Gonzalez, Ricardo H, Rathore, Abhishek, Raque, Angel M, Raubach, Sebastian, Rife, Trevor, Robbins, Kelly, Rouard, Mathieu, Sarma, Chaitanya, Scholz, Uwe, Selby, Peter, Sempéré, Guilhem, Shaw, Paul, Simon, Reinhard, Soldevilla, Nahuel and 5 more

Cited by 1Open access

Abstract

Motivation[br/]\nModern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on multiple systems. As analyses of interest increasingly require aggregation of datasets from diverse sources, data exchange between disparate systems becomes a challenge.[br/]\nResults[br/]\nTo facilitate interoperability among breeding applications, we present the public plant Breeding Application Programming Interface (BrAPI). BrAPI is a standardized web service Application Programming Interface (API) specification. The development of BrAPI is a collaborative, community-based initiative involving a growing global community of over a hundred participants representing several dozen institutions and companies. Development of such a standard is recognized as critical to a number of important large breeding system initiatives as a foundational technology. Â The focus of the first version of the API is on providing services for connecting systems and retrieving basic breeding data including germplasm, study, observation, and marker data. A number of BrAPI-enabled applications, termed BrAPPs, have been written, that take advantage of the emerging support of BrAPI by many databases.[br/]\nAvailability and Implementation[br/]\nMore information on BrAPI, including links to the specification, test suites, BrAPPs, and sample implementations is available at https://brapi.org/. The BrAPI specification and the developer tools are provided as free and open source.

Cite this paper

APA 7

Abbeloos, R., Backlund, J. E., Basterrechea Salido, M., Bauchet, G., Benites-Alfaro, O., Birkett, C., Calaminos, V. C., Carceller, P., Cornut, G., Vasques Costa, B., Edwards, J. D., Finkers, R., Gao, S. Y., Ghaffar, M., Glaser, P., Guignon, V., Hok, P., Kilian, A., König, P., . . . Soldevilla, N. (2019). BrAPI - an Application Programming Interface for Plant Breeding Applications. Prodinra (INRA Bordeaux-Aquitaine).

MLA 9

Abbeloos, Rafael, et al. “BrAPI - an Application Programming Interface for Plant Breeding Applications.” Prodinra (INRA Bordeaux-Aquitaine), 2019.

Chicago

Abbeloos, Rafael, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar Benites-Alfaro, Clay Birkett, Viana C Calaminos, et al. 2019. “BrAPI - an Application Programming Interface for Plant Breeding Applications.” Prodinra (INRA Bordeaux-Aquitaine).

Harvard

Abbeloos, R. et al. (2019) ‘BrAPI - an Application Programming Interface for Plant Breeding Applications’, Prodinra (INRA Bordeaux-Aquitaine).

BibTeX

@article{abbeloos2019brapi,
  title = {{BrAPI - an Application Programming Interface for Plant Breeding Applications.}},
  author = {Abbeloos, Rafael and Backlund, Jan Erik and Basterrechea Salido, Martin and Bauchet, Guillaume and Benites-Alfaro, Omar and Birkett, Clay and Calaminos, Viana C and Carceller, Pierre and Cornut, Guillaume and Vasques Costa, Bruno and Edwards, Jeremy D and Finkers, Richard and Gao, Star Yanxin and Ghaffar, Mehmood and Glaser, Philip and Guignon, Valentin and Hok, Puthick and Kilian, Andrzej and König, Patrick and Lagare, Jack Elendil B and Lange, Matthias and Laporte, Marie-Angélique and Larmande, Pierre and LeBauer, David and Lyon, David and Marshall, David and Matthews, Dave and Milne, Iain and Mistry, Naymesh and Morales, Nicolas and Mueller, Lukas and Neveu, Pascal and Papoutsoglou, Evangelia and Pearce, Brian and Perez-Masias, Ivan and Pommier, Cyril and Ramirez-Gonzalez, Ricardo H and Rathore, Abhishek and Raque, Angel M and Raubach, Sebastian and Rife, Trevor and Robbins, Kelly and Rouard, Mathieu and Sarma, Chaitanya and Scholz, Uwe and Selby, Peter and Sempéré, Guilhem and Shaw, Paul and Simon, Reinhard and Soldevilla, Nahuel and others},
  journal = {Prodinra (INRA Bordeaux-Aquitaine)},
  year = {2019}
}

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